Showing posts with label conferences. Show all posts
Showing posts with label conferences. Show all posts

30 January 2013

Going analog at a digital conference: #scio13

When I’m on the floor of Science Online 2013 in the next few days, this and a pen is the only thing I plan to have with me.




I’ll leaving my smart phone and tablet in the hotel room. I won’t be live tweeting. I may do a couple of end of day summaries here on NeuroDojo.

At other conferences, I am usually one of very few online. I have learned that people enjoy getting conference updates, so I do it partly out of a sense of service. But at Science Online, instead of being in a very tiny minority, it’s going to be 449 other people like me. This is probably going to be themost documented conference I will ever attend.

The point of a conference is to do something different. I interact with many of these people online regularly. Why would I do the same when I have them right here in front of me?

I don’t want to get to the conference and feel like Buzz Aldrin after Apollo 11. Aldrin watching a video of the press coverage of the Moon landing while in quarantine after splashdown, turned to Neil Armstrong, and said:

Hey, we missed the whole thing.

At Science Online, I want to be, as actors say, “in the moment.” Fully present, paying attention, and listening.

Update, 6 February 2013: Thought I was kidding about everything being documented at Science Online?



From here.

24 January 2013

Science Online 2013: “Blogging for the long haul”

Here is the next appetizer for the second of two Science Online 2013 sessions I’m co-moderating. “Blogging for the Long Haul” will be moderated by Scicurious and myself.

Note! This session will be streamed online to Science Online Watch Parties. Mark your calendars!

When I suggested this panel, I was thinking about strategies to deal with changing online ecosystems. Science blogging has stood the test of time. It’s lasted a good, solid, decade, and has gone from strength to strength. Yet we’ve also seen networks and platforms emerge, dissolve, and morph multiple times, with blogger packing up house and moving over and over.

There are issues like long term preservation of blogs, discussed here:

With the emergence of practices like open notebook science, science blogging, and science discussion forums a considerable amount of this content is being produced and presented on the web. If we do not act to collect this contemporary material, we may end up with more complete records of scientists’ unpublished notes and personal communication from previous eras than we do from our own.

Certain science stories that are likely to be of great interest to science historians played themselves out mostly on the blogosphere (e.g., arsenic life). If blogs are lost, so much context for understanding that episode in science will also be lost. (Blog preservation will be discussed at another panel. Nominate science blogs for archiving here.)

Dynamic Ecology touches on issues closer to the heart of this panel in this post:

Indeed, many established ecology blogs seem to be slowing down, especially over the last few months...

(I)f it is a trend, I hope it reverses itself. It’s hard to see blogging becoming a key way in which ecologists communicate ideas with one another if existing blogs (especially established ones) wind down. And since there’s a stronger incentive to blog once a “culture of blogging” exists, but not before, a field can’t really develop a culture of blogging in the first place unless there are some “early adopters”, pioneers like the folks who write the blogs listed above. If the early adopters themselves give it up before enough other folks have followed their lead, it’s hard to see how you ever get a critical mass.

For other examples of the changing ecosystem, Tumblr carved out a niche for hyper-focused “single serve” blogs. Twitter has also significantly changed the blogosphere: lots of things that people used to blog now get tweeted instead. People respond to posts with tweets instead of commenting on the blogs.

Speaking of Twitter, Miriam Goldstein tweeted this:

Was sad that your “Twilight of the Science Bloggers” session didn't make it. I definitely feel faded & dim.

Andrew Thaler replied:

I feel like I've been running on fumes for the last year. Would have been nice to talk about issues other than “yay-blogging”

And that’s only after five years. Imagine how you might feel at ten. That’s becoming a bigger part of the session than I originally expected: how to deal with fatigue, or writer’s block, or feeling unnoticed, or running headlong into the dip.

There are reasons a-plenty why you might feel burned out. When you first start out, there is nowhere to go but up. You see the number of hits accumulate, you see more people retweet or +1 your newest posts, and you have all these ideas that you have never talked about online that you want to share.

But eventually, your readership plateaus. You run into “second album slump,” as musicians know it. The first album contained the band’s ten best songs, tried and tested and honed by years playing them in bars. You can’t draw upon that tested back catalogue again for the second album.

27 and a Ph.D. epitomises the feeling that it’s all been done before.

At times I’ve gotten so discouraged by the internet overload that I’ve felt like everything I have to say has been said, and that maybe I should hang the blogging gloves once and for all.

Then there’s the green-eyed monster.

You might be blogging your little heart out. Then, someone who hasn’t been blogging as long as you is suddenly getting a lot of attention, has posts that keep getting retweeted and showing up on Ed Yong’s “I’ve got your missing links right here” weekly compilations, and joins some swanky science blogging network. Their post goes viral, while yours, on the same subject... doesn’t.

The Internet, she is capracious mistress.

What can you do to keep a blog going after the “new car smell” has faded? Obviously, we want to spend a good chunk of our session talking about this, it’s would be cruel to leave you hanging until then. Sci and I talked about a few tips that we have both used to keep us going.

1. Blog for yourself first. If you are being too driven by external indications of success (hits, visitors, etc.), you are likely to become discouraged, maybe too early. Seth Godin goes so far as to say that when it comes to a blog, “It doesn’t matter if anyone reads it.”


2. Schedule. Both Sci and I are great believers in the power of making a schedule and sticking to it. One post a week, once a month, it doesn’t matter, but it helps when you commit to a timetable. Neither of us are “I only write when I’m inspired” types.

3. Don’t self censor. “This is too old, too small, too flawed for a blog post.” But you can never tell what will resonate with people. Even two or three paragraphs looks substantial compared to a tweet, or a +1.

We will cover all that and much more! To end this post on a fun note, Chad Orzel does some filking with “Still Stuck on Paragraph Two.” If you can’t recall the tune, it’s here.

Update, 3 February 2013: A Storify of the session is available here.

Update, 4 February 2013: Scicurious has a wrap-up here that includes her Storify at the top, but if you scroll all the way down to the end, she has some more comments and thoughts.

Update, 5 February 2013: Char Orzel reflects on the session.

Green-eyed monster by Friday Felts on Flickr; sued under a Creative Commons license.

23 January 2013

Science Online 2013: “Open access or vanity press” appetizer

Recently, I got an email that began:

You are invited as a reviewer/a member of editorial board/an editor-in-chief of [Journal name].

Are you for real? Reviewer or Editor-in-Chief. You know, whatever. It’s cool.

For working scientists, this is something that rings alarm bells. It’s simply not the way business is done at other journals. But is that necessarily bad? This turns out to be a particularly timely example of issues related to one of the sessions I’ll be moderating at Science Online 2013 next week. Chris Gunter and I will be co-moderating the session, “Open access or vanity press?” Here is a warm-up, an opening gambit, an appetizer...

The OA Interviews: Ahmed Hindawi, founder of Hindawi Publishing Corporation - Open and Shut? (17 September 2012)

The speed of Hindawi’s growth, which included creating many new journals in a short space of time and mass mailing researchers, led to suspicion that it was a “predatory” organisation. Today, however, most of its detractors have been won round and — bar the occasional hiccup — Hindawi is viewed as a respectable and responsible publisher.

Nevertheless, Hindawi’s story poses a number of questions. First, how do researchers distinguish between good and bad publishers in today’s Internet-fuelled publishing revolution, and what constitutes acceptable practice anyway?

If you read only one thing in preparation for the session, I suggest the introduction to this interview. It’s 20 pages long (not the introduction and interview, the introduction alone), but it is comprehensive and substantial interview that deserves the “#longreads” hashtag. But that introduction is one of the best descriptions of the issues around the problems of legitimacy of open access publishing that you will find.

If you’re looking for a shorter synopsis, perhaps this one pager will work for you.

As Open Access Explodes, How to Tell The Good From the Bad and the Ugly? - Enserink M. 2012. Science 338(6110): 1018. DOI: 10.1126/science.338.6110.1018

Picking the right journal has always been difficult, but the plethora of new open access (OA) journals — and the increasing pressure from funders to publish in them — has made the choice even more daunting.

If you want to move from theory to practice, and how this plagues working researchers, especially people early in their careers, check this two part story at Nothing in Biology Makes Sense! It encapsulates the problem in a nutshell:

Predatory Open-Access Journals? - Nothing in Biology Makes Sense! (12 July 2012)

So I submitted to this journal, after looking up some of their papers and a few people that have published there and convincing myself it wasn’t a flat-out scam.

One day after I submitted, I got an email asking me to review my own article. I know, right? How could that ever happen with a legitimate journal? ...

Then, this morning, I got final acceptance of the manuscript and I’m not sure what to do.

Predatory Open-Access Journals: Part 2 - Nothing in Biology Makes Sense! (14 July 2012)

There were many good reasons, in my mind, to just do it – it was peer-reviewed, my article and software are sound (though a minor contribution) and I would like closure on this project I finished a year ago. It turns out, there are some even better reasons not to publish with this journal.

That pair of posts sort of sums up the conundrum. Going back some time, we find some ways that people have assessed quality by other means.

Adventure in open access publishing - The Scholarly Kitchen (12 March 2009)

Just how desperate was this publisher for a manuscript? Would they accept just any submission as long as I was willing to pay their $800 publication fee? I decided to embark on a little experiment.

While this experiment did not result in acceptance, a second, similar experiment did.

Open Access Publisher Accepts Nonsense Manuscript for Dollars - The Scholarly Kitchen (10 July 2009)

This is a key story that was widely reported and contributed to the poor reputation of open access journals.

The publisher that fell victim to the first hoax in 2009, Bentham, has also received other poor press for perpetually bugging people.

Really sick of Bentham Open Spam - Phylogenomics (30 June 2009)

This is basically a form of SPAM as they send these out to people no matter what the connection is to the journals field.

For $&%# sake, Bentham Open Journals, leave me alone - Phylogenomics (19 November 2009)

The most annoying part to me of Bentham Open is that they try to make it seem that anything published in an Open Access journal is better than anything published in a non Open Access journal. While I personally believe publishing in an OA manner is great, lying about the benefits of OA is not a good thing.

The rise of science spam - Neuroskeptic (27 November 2012)

If you are resorting to spam to get to people to write for your journal, I don’t ever want to read it and will never cite anything published in it.

Even if you were only angling for readers, I’d be suspicious of your integrity, but to spam for people to submit to you is absurd. Even mediocre journals nowadays get far more submissions than they can ever print. So if your journal isn’t even mediocre enough to attract people then you have a real problem.

This raises the question, though, of how a new journal can ever gain legitimacy. Even PLOS ONE, a success by most standards you’d care to name, was new once.

The Bentham case in 2009 was not the only example of a hoax paper accepted for publication. Another occurred last fall.

Mathgen paper accepted! - That’s mathematics! (14 September 2012)

I’m pleased to announce that Mathgen has had its first randomly-generated paper accepted by a reputable journal!

Math Journal Accepts Nonsense Paper Generated by Computer Program - Geekosystem (19 October 2012)

(I)t’s randomly generated nonsense – grammatically accurate sentences penned by a computer program that have no mathematical merit, so seriously, don’t feel bad if it doesn’t make sense to you. You know who should feel bad, though? The person at the open access math journal Advances in Pure Mathematics who accepted this paper for publication.

Analyzing the math paper hoax, Bob O’Hara thinks molehills are made into mountains.

Open Access: credit where it’s due - GrrlScientist (26 October 2012)

The journal that accepted the randomly-generated paper is published by SCIRP, and is on Jeffrey Beall’s List of Predatory, Open-Access Publishers. In other words, we know from their behaviour that they essentially act as vanity publishers for scientists. Based on the number of spam emails I receive from them, I suspect they’ve managed to become quite well known for this. Which means that nobody will think highly of a paper published in one of their journals, so very few scientists will want to submit a paper to them: you simply don't get any credit from your peers for publishing there &ndash indeed, they may even laugh at you behind your back.

Jeffrey Beall, who is mentioned above, is one of the names that comes up most frequently in discussions of predatory open access journals. He maintains a list of suspect publishers, and investigates new publishers. Here’s an example of his investigative work:

Copying Elsevier - Scholarly Open Access, 16 October 2012

The journal gratuitously uses the Elsevier logo in a prominent position on its homepage. It also lists an impact factor — which it does not have.

To compete in a crowded market, predatory journals need to look as prestigious and authentic as possible. The publishers of this journal have done a spiffy job of creating a website that makes it looks like their journal is an Elsevier journal. ...

It didn’t take me very long to find plagiarism in the journal’s articles.

Beall is often called upon to comment upon open access publishing.

Predatory publishers are corrupting open access by Jeffrey Beall, Nature (13 September 2012)

Honest scientists stand to lose the most in this unethical quagmire. When a researcher’s work is published alongside articles that are plagiarized, that report on conclusions gained from unsound methodologies or that contain altered photographic figures, it becomes tainted by association. Unethical scientists gaming the system are earning tenure and promotion at the expense of the honest.

On the problem of “predatory open-access publishers” - SV-POW! (17 September 2012)

(T)his issue is nothing to do with OA: there always have been and always will be fraudulent journals and publishers alongside the good ones; and it always has been and always will be authors’ responsibility to avoid them and go to the good places instead.

Crowdsouring a database of “predatory OA journals” - SV-POW!, 7 December 2012

My feeling is that, while a good solution could certainly say positive things about good publishers as well as negative things about bad publishers, we do need it to produce (among other things) a blacklist, if only to be an alternative to Beall’s one. Since that’s the only game in town, it has altogether too much power at the moment.

Indeed, Beall’s influence is large enough that he was targeted by a smear campaign that claimed he would consider removing publishers from his list if he was paid $5,000. I grabbed the text from a forum around 10:00 am one morning, but it was gone by 10:30 am or so:

I was surprised when one of our editors told me that the name of Ashdin Publishing is found in the list of "Beall's List: Potential, possible, or probable predatory scholarly open-access publishers" ... After I received the e-mail below, I am not any more surprised. Now, I am sure that the author, irrespective the good reasons he may has for preparing this list, wants to blackmail small publishers to pay him.

-------- Original Message --------

Subject: Open Access Publishing
Date: Mon, 03 Dec 2012 17:39:18 +0000
From: Jeffrey Beall
To: info@ashdin.com

I maintain list of predatory open access publishers in my blog http://scholarlyoa.com

Your publisher name is also included in 2012 edition of my predatory open access publishers list. My recent article in Nature journal can be read below

http://www.nature.co...-access-1.11385

I can consider re-evaluating your journals for 2013 edition of my list. It takes a lot my time and resources. The fee for re-evaluation of your publisher is USD 5000. If your publisher name is not in my list, it will increase trustworthiness to your journals and it will draw more article submissions. In case you like re-evaluation for your journals, you can contact me.

Cordially
Jeffrey Beall

This was untrue, Beall said.

I've been a victim of email spoofing in which someone is sending emails that appear to be from me but really are not.

One of the spoofed emails is an offer to "reevaluate" a publisher's presence on my list for five thousand dollars. These emails try to make it look like I am extorting money from publishers.

Beall’s solution to the problem of open access versus credibility?

On Predatory Publishers: a Q&A With Jeffrey Beall - Chronicle of Higher Education (5 June 2012)

I support what I call “platinum open-access.” This is open-access without author fees, and with the publication costs supported by volunteer work and benevolent funders. There are a few publishers that now use this model, but it’s not sustainable and it’s not scalable to all of scholarly communication. The only truly successful model that I have seen is the traditional publishing model.

One of the aspects that I did not initially consider in proposing this topic was the cultural issues involved. Developing, non-“Western” nations seem to be not only the source of, but fall prey to, much of the bogus publishing.

“Suspect” journals take scientists for a ride - SciDevNet, 21 January 2013

Young researchers in developing countries can be easy prey. The pressure to publish has risen dramatically because career advancement depends on it — publications can embellish a job application. ...

Researchers often do not realise they are being duped, he says. “In fact, the assumption is entrenched in academic circles in Nigeria that the higher the fee charged [by the journal], the higher the quality.”

Coincidentally, Nature reported on this relationship just the next day:

Price doesn't always buy prestige in open access - Nature, 22 January 2013

The “real goal”, West says, is to help to create a transparent market in open-access publishing. “We hope to clean up a little of the predatory publishing, where publishers might be charging more than their value merits.”

The tool, called Cost Effectiveness for Open Access Journals, incorporates pricing and prestige information for 657 open-access journals indexed by Thomson Reuters, including 356 that do not charge any fees.

Meanwhile, the biggest and most successful open access journal, PLOS ONE, continues to be a lightning rod. Here are just a few tweets:

“Many people have flat out said PLOS ONE papers won't count” (For tenure / promotion - ZF) – Lewis Lab

“I want to be an ally. But PLOS ONE isn't helping. (People) less attuned equate (Open Access) with low bar. Not good for science.” – E.G. Moss

“I’ve now heard from several tenured or near-tenure profs that publishing in @plosone was career suicide. Thanks a lot Open Access” – Ethan Perlstein

“A search (committee) chair once told me ‘PLOS ONE papers don't count, they publish anything’” – Eric J. Deeds

I have my own posts on this matter.

As Nigeria is to banking, India is to science publishing - NeuroDojo (6 January 2010)

I recently received this in my inbox. And I was all, like, “Whoa.” It was like I’d traveled back in time to the early 1990s and landed on an old GeoCities page. The explosion of typefaces and random colours, the spelling mistakes, the random religious element... slap on a page counter and some blinking text, and it would be indistinguishable.

But no, this is supposed to be from a serious scientific journal. Excuse me, “Joournal”.

More journals that smell like spam - NeuroDojo (29 January 2010)

It’s be great that the publishing revolution creates the potential for new journals. But from a research author’s point of view, it’s the wild, wild west out there. And it’s not clear yet who are the honest settlers and who are the cattle barons and con men.

Post-publication peer review - NeuroDojo (20 September 2010)

It’s incredibly tempting to send in a hoax article to see if their “post-publication peer review” calls it out as gibberish.
I look forward to hearing the thoughts of those at Science Online next week!

Additional, 24 January 2013:

Advice: how to decide where to submit your paper – Dynamic Ecology (24 January 2013)

There are those who feel strongly that selecting papers on the basis of “interest”, “novelty”, “importance”, and other such attributes is a purely arbitrary business with no place in science. I don’t take that view. But if you feel that way, you need to decide whether you’re prepared to live by your principles and submit all your work to PLOS ONE or other unselective journals, given that many of your colleagues do not share your views and may not view your CV very highly.

I’m getting increasingly interested in the line between “not viewed highly” and “predatory.” If two publishers take money for article fees, and your article is published, but neither is viewed by colleagues as “counting,” arguing over the relative rigour of peer review is almost moot.

Update, 8 February 2013: Here is a Storify of the session, courtesy of Doctor Free-Ride:



“My Life in Tweets” photo by STML on Flickr; raptor picture by Andrea Westmoreland on Flickr; both used under a Creative Commons license.

09 January 2013

Science Online (if you’re in the lobby): SICB 2013 and the Internet

The SICB conference this year was probably a good example of how ambivalent scientific societies are to the online world.

First, the only place you could get wi-fi was in the hotel lobby. It was not a long way to the lobby from some rooms, but live-tweeting was difficult. I could have used my phone to tweet, but it’s much easier with a tablet or laptop and a wi-fi connection.

The issue, I learned, is that the hotel does not provide wi-fi to it conference rooms. It is a separate company. While other conference services can be negotiated with the hotel, who has the carrot of many guests filling their rooms, this one cannot. And the wi-fi provider cares not one whit how many people come to the hotel.

If I remember right, it would have cost $35,000 to provide wi-fi connections throughout all the rooms for about half the attendees. This underestimates the scale, however, because it assumes each attendee has only one connection. A phone and a tablet connected through wi-fi is two connections.

Apparently, SICB is considering raising the registration fees to subsidize wi-fi connections if members are willing to foot the bill for the connections.

More good news was that this was the first conference I have ever been to that had a dedicated app for phones and tablets and such. This was, for a society that has been reluctant to embrace the online world, surprisingly progressive. Members were extremely interested in the app.

More bad news came in the actual usability of the app. There were many good ideas, but they were often poorly executed.

Among the issues...

The sorting of the events was made it almost impossible to find events. After “1” came - not 2 - but 11, 12, 13... then 100, 101, 101... and then 2. This is strict alphabetical order as a computer understands it, but was hell for people.

Although the apps required you to log in, if you had it on two devices, the accounts did not sync. If you added an event on your phone, it would not later show up on your tablet.

Updates from the conference organizers sent through the app went to a region called “Archived” rather than “Inbox”. There was no clear signal on the home page when there was a new message.

Maps of the hotel never showed up on the Android phone version of the app I was using.

I could not search for events on my phone (again, Android) in the “Discover” tab.

Some of the critical details for event listings, like time and room, were set in tiny light grey letters, which was not the easiest thing to read. I could accept this for the summary, but not the main listing with the abstract.

Short talk titles had the advantage of their listings being set in much bigger point size. Long titles were rescaled so more of the words would fit on one line.

And there was the irony of having an app that made extensive use of Internet at a conference where wi-fi was not provided in any of the conference rooms,

All of this made sense when I learned that SICB attendees were more or less being used as beta testers for the app.

Other observations:

  • On the plus side, many people joined the society’s Facebook page in the few days before the conference.
  • On the negative side, the society's Twitter account has been used exactly once: to send a tweet saying “test.”
  • On the negative side, those people who were tweeting from the conference couldn’t agree on a hashtag. I was using #sicb13, but many (possibly most) were using #sicb, but I also saw #sicb2013. A strong official recommendation from the society’s Twitter feed would have helped.

I am hoping for much better things when the conference returns to Texas next year.

08 January 2013

SICB 2013, day 5: crayfish!

(Crossposted from Marmorkrebs blog)

I spent my last day at SICB in the session I was speaking in... crayfish!

The special session at SICB may well have been one of the busiest days for Marmorkrebs news and announcements in a long while. There were at least three major pieces of new information about this remarkable crustacean.

Polyploidy

Peer Martin provided evidence that Marmorkrebs are polyploid. This is an important step forward in understanding the original of asexual reproduction in this species. This strongly suggests that this may have been a "one off" chance event, either through some sort of incomplete separation of chromosomes or duplication of chromosomes, or hybridization.

Crayfish plague

As part of Peer Martin's talk, he discussed whether Marmorkrebs are "the perfect invader" as they were so memorably called. He included a discussion about the importance of crayfish plague as an issue in the invasive potential for Marmorkrebs. In the questions, I asked whether anyone had actually tested whether Marmorkrebs carry the plague, or whether it was simply assumed they were resistance, because essentially all North American species are. There is apparently one doctoral thesis that reports a Marmorkrebs carrying crayfish plague. That said, many in the lab, and one wild-caught animal, have tested for the disease.

More introductions of Marmorkrebs in the wild

Chris Chucholl reported that there are now six confirmed populations in Europe, five of which are in Germany. During my talk, I reported the “breaking news bulletin” that I'd blogged while waiting in line at Starbuck’s for a croissant that Marmorkrebs had been found in Sweden. Tadashi Kawai mentioned that a population had been found in Sapporo, but that it apparently died out.

Other highlights

Marmorkrebs was not the only only game in town in this session, however.

Tonio Garza de YTa discussed his experiences over a decade in working with farmers to develop sustainable, productive, profitable aquaculture for red-clawed crayfish in Mexico. The lessons he had were to develop the market first. There is no point in producing food nobody will buy. Secondly, make sure your product does not give itself away. The red-clawed crayfish got away from their cultured ponds and successfully established populations, which could be harvested more cheaply than the aquacultured crayfish.

Francesca Gherhardi talked about the importance of understanding behaviour of potentially invasive species. To give just one example, she examined the interaction between temperature and fighting between different invasive crayfish species. Spinycheek crayfish (Orconectes limosus) become more less active and more likely to seek shelter as temperatures increase. Signal crayfish (Pacifastacus leniusculus) become less competitive as water warms. Red swamp crayfish (Procambarus clarkii) change their aggressive behaviour very little, meaning swamp crayfish are poised to be the winners as temperatures warm under climate change.

Incidentally, my sympathy goes to Francesca, who was having quite severe voice problems. She had to whisper her whole talk. This worked to her advantage, as it gave her presentation an urgent, conspiratorial tone

Keith Crandall talked somewhat about some new research he is co-authoring on crayfish relationships, but much of his talk was geared to discussing tree of life projects, IN particular, I'm excited about opentreeoflife.org. Most taxonomic papers now are published as PDFs, which are great to look at, but hard to re-use any data in them.

The goals of the Open Tree of Life project are, in part, things near and dear to much of the online science community. They want to encourage refinement of the tree, annotation, and promote a culture of data sharing, not simply publication. Currently, people are as consistent about putting things into Treebase or Dryad as they are into GenBank.

Oh yes, and they want to assemble a complete tree of life in three years. Keith mentioned that the National Science Foundation has been supporting various tree of life related projects for about a decade now, and are getting quite eager to see a tree. This project will make it easier to identify holes in the existing tree.

SICB 2013, day 4

On Sunday, I saw biologists making do with lab tape, sunscreen, and “Wet and wild black matte fingernail polish.” There is still a lot of room for McGyver-style low tech equipment in biology.

I spent a good chunk of Sunday morning at SICB in a session on digging and burrowing. This is a subject near and dear to my heart, as it’s been one of the topics I've published on most consistently during my career.

Sarah Sharpe had a fun talk on how sandfish lizards bury themselves. Their lab had built a robot that could successfully mimic the lizard’s ability to travel through sand, but failed miserably at getting into sand in the first place. Through a series of simple experiments, Sarah showed that the sandfish lizards are hopeless if they cannot use their limbs. She showed a video of a lizard trying to submerge into sand with its limbs restrained, and it was just sad.

If they have just one pair available, the lizards can get into the sand, but they are very bad at it, particularly if they have only their back legs to work with.

Dwight Springthorpe did work that was probably closest to the stuff I had done in the past, looking at ghost crab burrow construction. He showed some very cool x-ray videos of crabs with tiny little lead strips glued to them so they would be visible in the x-rays. Ghost crabs definitely have a preferred side that they dig with, using their walking legs to hook and pull sand towards them. He also showed that crabs are much faster to burrow when they are burrowing horizontally rather than vertically.

Kelly Dorgan had my favourite quote of the day, during her talk on digging by polychete worms: “I did what I often do when worms don’t cooperate, which is turn to theory.” Haven’t we all thought that at one time or another? She had a rich talk that tied how worms dig to the path of meandering rivers, among other things.

Kelly Mead Vetter did some fairly qualitative descriptions of mantis shrimp burrowing, Her work was more interesting because much of the ecological and behavioural work on stomatopods suggested the their burrows were hard to build, but she showed they were much more dynamic and changing over time.

At the end of the digging session, I was completely jealous of all the work that is being done in this field. It would be nice to get back to it, but other people are much better equipped to do much of it than I am.

After the digging was done, I focused mainly on sensory biology in the afternoon.

Trevor Rivers showed that sea creatures that fluoresce when attacked benefit from glowing. Worms that are able to glow when predators attack have about a 40% survival rate. This may sound like a losing strategy, except that if you consider that their survival drops to almost nothing when their predators can’t see them.

Nicolas Lessios, a former conference roommate, showed that Triops, sometimes marketed as a "prehistoric" crustacean, use their vision to maintain the position in the very bottom on the shallow, short-lived pools they often live in.

Michael Bok, author of the Arthropoda blog, demonstrated a neat partly trick of stomatopod crustacean eyes. Along a central band of their eyes, mantis shrimp have two visual pigments that absorb ultraviolet light. But using filters in the lenses of the eyes, the animals are able to differentiate the ultraviolet spectrum with much more precision. The only problem now is that it is not at all clear why stomatopods have these highly specialized eyes. Why do they care about ultraviolet light so much? Still unknown.

Ashlee Rowe, one of my partners-in-crime on a nociception symposium last year for Neuroethology, ended off the day, not with a bang, but with a sting.


She has been studying the relationship between grasshopper mice and their scorpion prey. The sting of the Arizona bark scorpion is nasty: strong enough to kill a human. It’s also incredibly painful, Ashlee related one description from a sting victim, who said it was like “being burned with a cigarette, then having a nail driven through it.”

The scorpion toxin is painful because it causes a sodium channel in neurons to become more likely to open, and stay open. The practical upshot is that neurons start firing action potentials, wildly out of control.

The grasshopper mice feel the pain. Young mice in particular will drop a scorpion they’re attacking if they are stung, but they never learn to stop attacking the scorpion. This suggests that the stings aren’t particularly painful or aversive. (At this point, Ashlee showed a video of a young, cute mouse getting nailed in the face repeatedly by a scorpion, prompting an audible reaction from the audience in sympathy with the mouse.)

Surprisingly, the scorpion venom works on the sodium channels of the grasshopper mice exactly the same way as it does on regular mice (which are not resistant). The grasshopper mice have evolved changes in a second, separate sodium channel that works a little differently. The scorpion venom binds to a channel that sets the threshold for a neuron, but those channels cannot start action potentials. A second sodium channel does that. And that’s the one that is mutated in grasshopper mice. As a result, the grasshopper mouse neurons don’t start the crazy, out of control spiking that the scorpion causes in other mammals.

Scorpion thrusts. Grasshopper mouse parries. A beautiful story in evolution and neuroethology.

(Oh, those items I mentioned at the start of the article? The tape was used to restrain sandfish lizard legs; the sunscreen was used to stop the eggs of brownheaded cowbirds reflecting ultraviolet light; and the nail polish was used to blindfold lobsters attacking fluorescing prey.)

Grasshopper mouse and scorpion picture from here.

06 January 2013

SICB 2013, day 3

It's nice to have a fitness center in a hotel. But you have to be willing to swallow your pride and do the walk of embarrassment from your room on the 17th floor, down through the lobby, around the corner, and back down into the sub-lobby, in your workout gear. This is easier at 5:00 am, which is when I woke up. My body is still on Central time, for which I am surprisingly grateful.

Never let it be said that tweeting to promote your talk is not worth it. Because Joel McGlothlin tweeted his talk, I went and saw it. He was talking about the evolution of garter snakes that resist deadly neurotoxin, which I’ve blogged about before. The wrinkle that Joel was bringing in is to look at is what order resistance evolved in. Different tissues have different kinds of sodium channels, so changing some will give you immunity to the poison, but only at low doses. If the amphibians get the ability to make more toxin, the snake needs another change in another channel to keep up.

Next, I saw Sonke Johnsen. He summarized some work on why giant squid have giant eyes. The answer, in broad strokes, was answered with "whales" a while ago. Sonke, in collaboration with others, has developed a general model of underwater visual ecology. Most of his talk had lots of equations, but the take home was that big eyes don't gain you very much because of water attenuation. The one advantage of a big pupil is looking at large, glowing objects. Like a whale setting of a lot of luminscence.

At the end, Sonke showed a picture of squid battling a sperm whale (this one), which was a cue for people to become marine biologists. “Hard not to after seeing that.”

Jean Alupay was looking at how often octopus are willing to lose one or more of their arms through autotomy. The particular species she was studying tend to autotomize their arms very easily. Over half were missing at least one arm. The front arms tend to be lost more, but there is a sex difference with the third arm, because that's where the sex organs are in males.

She showed some good video of a very active autotomized arm. It would be easy to see how it could distract a predator.

Feifei Qian had robots running through sand. Her question was how animals locomoting over sand deal with the variety in the size of grains, rocks, and boulders. This was more a robotics / automation talk than a biology talk.

However, she showed that automation is happening everywhere. She started off running her robots across sand in tanks that were maintained by undergrads. Initially, it two students two weeks working long hours to get preliminary data (67 runs). So instead, she built a completely automated system that reset the robot, sand, and boulders after each run. Now, this recording system can do a hundred trials in one day. She said she stills needs an undergraduate student though: she needs one student to take three seconds to press the start button.

Jayne Gardiner was interested in how sharks hunt. Sharks have a whole series of sensory abilities, that detect potential prey from close to tens of meters away. Do the senses combine, or do they switch from one sensory system to another?

My favourite moment in her talk was some video she showed of a bonnethead shark, where they had blocked electroreception. This left the poor shark completely unable to eat. The bonnethead shark can’t get food if the electroreception is blocked, because that’s the trigger for opening the jaws. They’ll swim in the tank all day, and hit the prey over and over and over again, but never open their mouths.

That's got to be a shark's version of hell.

Margot Schwalbe presented on a favourite of comparative biologists, African rift lake cichlid. Like most (all?) fish, these have canals that are part of the lateral line system that detect water movement. Are widened lateral line canals adaptations for prey detection? Some niche differentiation? She has two Lake Malawai cichlids species that feed on the same prey, but one has wide canals and one has narrow canals. The species with widened canals tended to use the lateral line system more than the narrow one.

Savithi Nair took me back to octopus arms for the second time today. She was looking at the behaviour of individual suckers in the arms. You might recall that probably half the nervous system of the octopus is in the arms, but how much do all those cells communicate? Is information shared between suckers? She found that they do, and that suckers do respond differently to different chemicals. The distance matters, as the reposes drops off with distance for the stimulus.

Still with cephalopods, Julia Samson showed that cuttlefish responses to sound. That cuttlefish can hear was not new, but her question was what sounds are ecologically relevant and matter to these molluscs? What behaviours occur in response to sound?

Cuttlefish don’t have "ears" in the proper sense; they're detecting sounds through organs called statocysts. Statocysts are more orientation and gravity sensors, but they way they work allows them to detect other kinds of disturbances. This means that the sounds have to be quite loud for cuttlefish to hear them. At high sound intensities, you get inking and startle responses. At lower volumes, the animals reacted with smaller colour flashes or fin movements.

David Ernst warmed my crustacean-loving heart by talking about ghost crab burrows on a beach. He showed that ghost crabs rarely return to their burrows. Any crab burrow is most likely to be occupied by a new crab every single night. This is a little surprising given the amount of time and energy that the crab has to invest in making the burrow.

Buddhamas Kriengwatana was the last talk I saw today. She was doing some nicely designed experiments testing how food shortages during development change the brains and behaviour of zebra finches. For instance, she found that continual food shortage means longer search times in finding mood, which means worse spatial memory. Being short on food late in development only specifically affected the finches on tests intended to measure their behavioural flexibility.

I had lots of interesting talks at the poster sessions that I can't summarize in full here, but remind me later to tell you the story of cryolite.

04 January 2013

SICB 2013, day 2: When predators attack! (And prey escape)

Ah, the first day of a conference, when the first talks in the day might actually get some people showing up.

I spent the morning in "When predators attack," which was about the behaviour and neuroethology of attacks and escapes. Given that conference panel diversity is an ongoing topic of conversation, this one stacked up... with room to improve, with 25% of the speakers being female.

The rundown:

Jerome Casas talked about using game theory to model pursuit and evasion between crickets and spiders, and also parasitic wasps. His team modeled the spider in computations to see the disturbances the spiders made, and it matched quite well. This means that there is a very specific sensory signature of a spied attack that the cricket can recognize, and it's nothing like anything you see in the biotic world.

But having done that for 15 years in the lab, he moved into the real world (Dupuy et al 2012). They moved their piston in the field, with all the leaf litter and noise, and I'd field electrophysiology. They got evidence that the crickets can detect the spider by the wind the spider makes. But they found that the cricket "listens to everything". They could pick up cars driving by and planes flying overhead in their physiological recordings from the cricket cerci.

Barber and Kawahara gave a very cool team talk about hawkmoths. They generate my most popoular tweet of the day: some hawkmoths are able to deter bats from attacking them by making noises at the bats... with their genitals. (Strictly speaking, it was the genital scales, but that little detail got lost in the tweet.)

Chuck Derby asked: Can prey "turn off" the senses of predators, maybe using chemicals (sensory inactivation)? He suggested for octopus ink or bioluminescent flashes, but said that there is not a lot of experimental evidence. He showed some nice experiments that show opaline from sea hares (Aplysia) will block sensory neurons, primarily by the physical actor covering them with sticky goo.

Anthony Leonardo and Stacey Combes gave two talks on dragonfly attacks, both emphasizing the dynamic visual strike the dragonflies make. Leonardo emphasized more the decisions to attach, while Combes looked at the differences in the hunting behaviour from species to species, and how they handle different prey items. Turns out that while big prey have a lot more energy, they are much herder to catch.

In between the dragonfly talks, Paolo Domenici discussed variation in escape responses. Traditionally, escape responses have been viewed as stereotyped, almost reflexive behaviours, but Domenici argued (mainly using fish examples) that variation is crucial to escapes. He also showed many fast behaviours that are almost indistinguishable from escape that make distinguishing the escape responses from other behaviours tricky.

Roy Holzman is interested in what makes a good predator, and what makes a successful strike. Many models don't take into account something like suction, where a predator can capture a prey without even touching it.

Sheila Patek (one of my science crushes) asked: what does it mean to be fast? We normally think of this as pure speed, but colloquially and in science, it's more complex. She also asked us to question our assumptions about what speed "means" in a predator-prey interaction. Patek noted that the typical hypothesis is that predators and prey species are locked in an arms race to be the fastest animals. Her preliminary data from many species showed, however, that predators that are chasing after evading prey are not the fastest animals out there.

Sheila had one of the most honest moments of the session, when she described how she had this hypothesis that mantis shrimp that spear actively swimming prey should be faster than mantis shrimp that smash unmoving prey. "I tortured my grad student Maya for six years, because I did not believe her results. So this talk is in honor of grad students being tortured by PIs." Her hypothesis was wrong. The smashers are faster (comparatively; deVries et al. 2012 JEB), even though the basic mechanics are the same.

Malcolm MacIver is looking at the similarities and differences in zebra fish and electrician in how they use vision and electroreception, respectively. Larval zebra fish have a very limited range, and you also have differences based on the morphology. Zebra fish hunt in front of them, and can switch laterally very quickly, so their prey are close and near the head. Knifefish can go backward, so their prey can be in a much wider range of space.

I also learned that the cloaca (a sort of all-in-one excretory opening) of knifefish has moved way forward compared to other animals, and sits almost under the head of the fish. This is probably related to the lengthening of the anal fin the fish use to swim.

Bill Stewart was also looking at fish, but this time, how fish detect predators. Water flow is important. An intact lateral line in larva zebrafish means it is eight times more likely to escape an attack than a fish with an ablated lateral line. This also means that they can escape in the dark, using the bow wave from the predator as a directional cue to escape.

Eve Robinson talked about predators that don't move. Sea anemones are benthic predators, but that they are relatively immobile means that their hunts, and the ability of their prey to escape, is heavily affect by local water flows. Flow increases encounter rates, but this doesn't necessarily translate into changes in capture rates. Copepod prey, for instance, land on tentacles less often under low water flow, but they stay on the tentacles for a much longer time.

Speaking of copepods, Thomas Kiørboe used copepods to make the point that all animals are both predators and prey. This can make it dangerous to eat (for a copepod!).

Copepods have three feeding strategies: ambush, crushing, and creating a feeding current. These three mechanisms are not equally efficient, and each has different predation risks due to fluid disturbance. Hovering is highly efficient, but is risky and has high energy costs.

I enjoyed this session tremendously. The one problem, though, was that it made me insanely jealous. I want to be able to use all the wonderful toys they had, so I can answer a bunch of lingering questions about escape responses in decapod crustaceans! (See my review in Brain, Behavior, and Evolution on these issues.)

SICB 2013, Day 1

Given my woes traveling in 2012, I've been nervous making the trip to San Francisco. My first scare was that my flight to Houston was overbooked, and I was wondering, "Am I getting bumped off the plane?" The second scare came when the plane from Houston stopped on the runway, and the Captain informed us that they was a computer problem that was requiring them to restart the computers on the plane. Fortunately, both were resolved without incident, and I was on my way to San Francisco.

I also took my own advice to talk to someone I spotted with a poster tube. As a result, was rewarded with a nice chat with someone from Texas A&M Galveston. He will be showing a poster on the biomechanics of sea lion feeding that he did at Vancouver, near my old stomping grounds.

At the hotel, I discovered that there is free wi-fi in the lobby... but not in the conference rooms. Or my room. While there was grumbling about the unsuitability of this on Twitter, in one way, this is kind of brilliant. It forces a lot of people to be in one central location, and this creates more opportunities for meeting up with people you know, or want to know. It enhances personal networking, even though there is a cost in online networking.

At the plenary session, it was mentioned that this was the largest SICB meeting EVAH. No actual attendance numbers were given, though.

Rich Satterlie gave the plenary talk, which was great for me, as he did invertebrate neuroethology. The introduction mentioned he was criticized for him leading SICB in a very public stand against Louisiana governor Bobby Jindal over teaching of evolution, and refusing to hold SICB in Louisiana (applause). "Some things were said about him that were not true; others that were not possible."

When RIch started, he said, "You might want to move to the side. One reasons is to see the slides, the other is that when I get excited, I start to salivate." That was about the funniest Rich got. I loved the work he presented, but I think I've seen him give better presentations.

After the plenary was a nice opening social, with a layout of resolution-breaking deserts. They were positively deadly for anyone with anything like a sweet tooth. San Francisco, what is it with you and your delicious cupcakes?

I had a good talk with Justin Scioli (https://twitter.com/justinscioli/status/287077446057095169). You should follow him on Twitter and pester him about when he's going to start his blog.

Talks start in earnest on day 2, with an embarrassment of riches. I think I will be spending most of the day in predator/prey interaction talks.

20 October 2012

An apology

Some years ago, I organized a conference symposium with no women on it.

That was wrong of me, and I’m sorry I did that.

In proposals I’ve submitted since, I’ve made it a point to have near parity if not parity, and will do my best to do so in anything I organize in the future.

11 October 2012

Advice for Neuroscience 2012

I am not able to attend this year’s Neuroscience meeting, because I have a mess of travel coming up in the next few months, not least of which is my long awaited #Scifund expedition!

I have been to New Orleans a few times at previous Neuroscience meetings, though. In fact, the first Neuroscience meeting I attended was in New Orleans. So trust me when I say this.

Never bet a shoeshine in New Orleans.

Here is what happens.

You will be approached by someone who will offer a friendly wager.

“I’ll bet I can tell you where you got those shoes.”

You agree to purchase a shoeshine if he can tell you where you got your shoes. Most people, being from out of town and tourists, think this is a safe bet, and that this person could not possibly guess where you bought your shoes. Neuroscience attendees are even worse, because they think they are so smart.

The punchline comes in a few different forms.

One is, “You got one one your right foot and one on your left foot. I said I’d tell you where you got ‘em, not where you bought ‘em.”

Another version is, “You got ‘em in bourbon Street in New Orleans.”

And you will be paying for a shoeshine. And it won’t be a cheap shoeshine, either.

When Neuroscience rolls into New Orleans, you have a lot of highly educated people people walking around the French quarter who more or less have the word “SUCKER” tattooed on their forehead. Don’t make it easy to be tagged as a sucker: take your conference badge off when leaving the conference center.

And the moral of the story is: No matter how smart you think you are, you’re not that smart.

Additional, 12 October 2012: Proof that I am not making this up.

Additional, 18 October 2012: Totally not making this up. Also, Joel Adamson has advice on another wager you should not make in New Orleans.

Photo by David Paul Ohmer on Flickr; used under a Creative Commons license.

11 August 2012

Tenth International Congress for Neuroethology, Day 5

After a fairly late night on the cruise, plus the usual last day attrition, made for a slightly subdued day for many attendees. But not for me.

The last plenary talk of the conference was Toshiya Matsushima, who was discussing decision making in chicks. He was one of those speakers who is very quiet, almost soft-spoken, but who has a way of pulling you into his world. And he still threw in the occasional joke, with a low-key, but still funny, delivery.

He briefly mentioned how grateful he was for the support of the Society following the tsunami and subsequent Fukishima disaster. Then, he described a series of experiments looking at how chicks decide how to feed. They can train chicks to peck for food, and do various manipulations where they reward less food immediately, or more food after a brief delay. He again invoked the Heiligenberg rule (“Use the champion animal”) to say that chicks were champion feeders. There is high mortality among chicks, and they have to put on weight very quickly in the first few days after hatching.

He also recorded from the chicks’ nucleus accumbens, and found that there were some neurons that responded to the amount of food that was expected (the learned response), the expected delay, and the actual reward. He compared these to three judges who had to decide on a single sentence (the behaviour).

Then, he described what happens when you do surgery on this region of the brain. There are a couple of different effects. For one, the chicks become impulsive. The chicks also become more persistent, and will continue pecking even when they get no reward for much longer than normal chicks.

He ended his talk comparing scientific research to, of all things, bonsai trees. But it was a lovely metaphor. A bonsai is not a forest, but a single miniature tree. You cannot create a bonsai quickly; it takes decades. it may even be passed from generation to generation. But through this human art, you catch a glimpse of nature.

I did not get a relaxing coffee break, as I was working to make sure the speakers for the nociception symposium were all good to go. (Neuroethologists use video than most, and video is still exceptionally picky in presentation software.) Such is the life of a symposium co-organizer.

Dan Tracey was, um, our representative for the “evil four.” He's been working on nociception in Drosophila for about ten years. Although the title of the symposium was “Nociceptors in the real world,” Tracey said he was really talking about pain. He noted that people can study responses to light in both humans and flies, and both get to call it vision. It’s not that only the human researchers get to study “vision”; the fly researchers do not have to say they study “photoreception.”

With the genetic tools at his disposal, he and his lab has been making excellent progress on what genes and neurons are responsible for nociception in flies. For instance, he has been able to put channel rhodopsin in flies, and cause the maggots to do their characteristic thrashing behaviour of nociception by shining light on them. “This was the coolest day ever, because it worked.”

But he never loses sight of the behaviour. There are a lot of great ecological research questions about the relation of the maggot’s nociceptors with parasitoid flies that attack them. Tracey showed the maggots can actually shake off the parasitoid attackers, prompting him to say, “When you see a fruit fly, I want you to think of Sigourney Weaver,” in reference to her famous Aliens roles.

Robyn Crook is workings with a favourite of this blog, cephalopods. She was able to record neurons that act very much like nociceptors, which nobody had ever done in cephs before (as discussed here a couple of years ago).

Her take on nociception was to relate it not to short term stimuli, but in the context of long term injuries. Squid, which she works with, are often found in the wild missing the tips of their tentacles, for instance. She was able to show that the squid do change their defensive behaviours when given these mild injuries. They tested these with sticks with hairs on the end. “Behaviour has complex equipment. Duct tape is very important,” she deadpanned.

Co-organizer Ewan St. John Smith talked about his work on naked mole rats, a good chunk of which was published in Nature last year. Naked mole rats have a small number of common mammalian sensory neurons called C-fibers. And it is just the naked animals, not other haired mole rats that have this reduction.

Not only that, they are insensitive to acids. Somewhat surprisingly, all the ion channels of acid detection were still in the mole rat neurons, but there was a sort of genetic “shunt” that prevented the neurons from generating action potentials when exposed to acid. All of these seems to be related to the mole rats living almost perpetually underground in high carbon dioxide laden dens.

The last speaker was Victoria Braithwaite, who was talking about fish nociception. (You can find my review of her book, Do Fish Feel Pain? here.) She summarized some of her work on the nociceptive sensory neurons from about 10 years ago. Her more recent research is geared to showing not just that fish have nociception, but that they use that information in a way that is suggestive of pain.

One of the big arguments that she has faced from critics is that fish cannot feel pain because they have no neocortex. She argues that the relevant brain structures for processing pain in humans are the amygdala and the hippocampus, and fish do have equivalent structures in their brains.

L to R: Ewan, Dan, Robyn, and Victoria

All our speakers had lots of questions at the end of the session, and we were all able to continue the discussion over lunch.

I was incredibly pleased. I thought the symposium achieved everything we had set out to do. The talks were a great mix, and none felt out of place at a neuroethology meeting.

I had to leave immediately after lunch, and could not stay for the last contributed talk session. I was particularly bummed to miss the talk by my co-organizer Ashley, who was one of the very last speakers for the entire conference.

I got to the airport in what I thought was plenty of time, but my self check-in failed. So I went to stand in a line-up. A line-up that lasted over an hour. When I finally got to the front, I learned that my flight had been delayed. Again. And my connecting flight in Dallas was the last one of the day. I was almost certainly stuck in the Dallas airport for the night.

Externally, I laughed. Because you have to, as they say. Internally? “Crap crap crap crap.” I got one tiny little ray of hope: Dallas flights were also being delayed, so I might make it. But I only gave theft about a 10% chance. And I dropped that to 5% when the flight missed its delayed departure time by about 45 minutes.

But I made an excellent start on this blog post.

I got into Dallas about 10:00 pm, and the last flight back to McAllen was long gone. And I was indeed stuck in the airport overnight, left to wonder what god of travel I had so annoyed that have m last three trips delayed so much that I arrive at my destination on the wrong day. Fortunately, a computer can now make longe delays much more tolerable than they used to be.

10 August 2012

Tenth International Congress for Neuroethology, Day 4

Today was a half day at the meeting. The organizers deliberately scheduled half a day of free time so people could muck around the Washington, DC area if they wanted.

The first morning talk was by Elke Buschbeck. She and her team have been busy studying insect eyes. But these are probably not the "fly eyes" that you think of when you think of insects. These are structurally different and called stemmata. The cool discovery she made a few years ago was a diving beetle which has bifocal stemmata. Her students had presented this two years ago at the Ninth Congress in Salamanca (had just come out in Current Biology, I think), so I knew part of this story. But I was still very interested to see the videos of this beetle in action.

What I don’t remember hearing before was that these baby beetles have a optical burqa. All the light sensitive cells in their eyes line up in a single narrow strip. Imagine your could read only this line of text, and you were blind to everything above and below it. That’s the diving beetle’s visual world at this stage. Buschbeck showed great video of the beetles coming in towards pray, and they “bob their heads,” scanning up and down so they can see the whole image.

It's a very odd way to make an eye.

Of the three concurrent sympsosia later, I went to one on invertebrate movement, which is sort of my old home territory. Most of it was familiar to me, but this factoid caught a lot of people’s attention on Twitter.

Lots of people know octopuses are brainy invertebrates. All told, they probably have around half a billion neurons throughout their body.

About two thirds, 66%, of those neurons are in the legs.

Octopuses have very distributed nervous systems, and some of their behaviour doesn't need to be controlled by the brain at all. The presenter, Binyamen Hochner, said that computation can occurs anywhere. And he didn't just mean outside the brain; he is essentially arguing that the body itself can carry out some computations.

For my afternoon, I went to the mall and ended up in the U.S. Botanic Garden. Looking at plants was about the right speed for me. A good mental palate cleanser. Then, off to the evening banquet on a ship cruising the Potomac (pictured above).

One more day, and it will be the best so far! Because tomorrow there is a symposium on nociception that I helped to organize. This has been in the works since the Salamanca meeting two years ago, so I am pretty excited to see it about to come together.

08 August 2012

Tenth International Congress for Neuroethology, Day 3

Learned today that this conference has 563 attendees from 28 countries.

Today proved yet again that Ron Hoy’s “core four” (or “evil four”) is the stickiest sound bite of this conference. (Walter Heiligenberg’s advice, “Use the champion animal” is a close second, though.) There was only one featured talk today, by Constance Scharff. Her talk, on bird song learning, was a pitch to have songbirds “join the club” to turn the “evil four” into the “evil five.”

Scharff describe songbirds as the “champion” vocal learners. Not many animals learn by imitation of other animals, and even fewer learn vocalizations. One of my favourite moments of today was Scharff playing a recording of a German folk song... sung by a bullfinch. Obviously, this is not a normal thing for a bullfinch to do, and it must have learned how to sing that particular song by listening to humans.

In humans, there has been a lot of interest in a gene called FoxP2, because it has been specifically linked to speech impairment in humans. Inevitably, some people suggested that mutations in this one gene are an important aspect of what gives humans our highly elaborate vocal system - language.

Wile I am loath to simplify a complex story, since I complained about just that in the last paragraph, there are some indications that FoxP2 is needed for normal song learning. Using RNA interference and a variety of other techniques, they were able to knock down FoxP2 expression in songbirds. Songbirds treated this way were not able to learn anywhere near as well as the untreated controls.

There were three concurrent sessions after this. I went to one on navigation, which featured research on birds (relating magnetic sense to polarized vision), fish, bats (both about navigating in 3-D space) and bees (how they “stick the landing”). If you check the #icn12 hash tag on Twitter, you’ll also find tweets on a session of nervous systems coping with lack of oxygen. If any reader was at the motor program symposium, I'd love to hear some comments!

The business meeting had several awards, news, and choices for the congress in 2016. Without a doubt, however, the emotional highlight was a retrospective of the late Bob Capranica, a pioneer of amphibian neuroethology and, in later years, big supporter and booster of the field. He created and administered a prize for young neuroethologists out of his own pocket. Recently, the Neuroethology society took over management of the prize, and it now bears Capranica's name. Bob Diego earlier in the year, but Pat Capranica was there to receive an award for the work that she and her husband Bob had done in promoting neuroethology. She received a standing ovation.

Tenth International Congress for Neuroethology, Day 2

Ack! Can't believe we're already past the 40% mark for this conference! Some highlights from today...

Opening the day was Ole Kiehn on tracking the spinal cord circuits for locomotion. Ron Hoy’s talk from yesterday clearly made an impression, as Kiehn referred to humans as “the fifth evil species.” Keihn's work also echoed Hoy's talk in that it showcased how people trained in traditional electrophysiology are increasingly using genetic techniques, like optogenetics.

And I got “Bingo!” during Ole's talk when I saw someone a few rows ahead of me checking Facebook.

The second half of the morning was taken with the Young Investigators symposium, with four great talks, one of the highlights of the meeting so far.

Antoine Wystrach lit it up with a talk on ant navigation. I particularly enjoyed how he hinted that his lab bought something clandestine to generate... Vibrational stimuli.

Basil al Jundi had some more navigation with insects using celestial cues, with some particularly fun videos of dung beetles, which use light to roll their balls of dung in straight lines.

Michael Yartsev gave a talk that in other meetings, might be very controversial. He was showing a series of experiments in bats that showed that one of the major theories for how place cells work (developed using rats and involving theta rhythms) could NOT explain place cells in bats (no theta rhythms in bats). It was a strong demonstration of the limitations of using single model organisms and the power of comparative methods.

Lauren O’Connell had what was arguably the quote of the day, explaining monogamy: “Monogamy is tolerating your partner being around you.” Again, Lauren's work had a huge genetic component, showing how neuroethology in increasingly becoming neurogenetic ethology.

The afternoon plenary had Malcolm Burrows showing a wide array of videos of insects jumping. Insects that were good at it, bad at it, legs bending like archer's bows, insects jumping off water. But the highlight was perhaps when he went to pull out ap cicada that he had found that morning, a relative of the frog hopper he was talking about.

"Oh no, it's gone." It had escaped, and could be seeing flying around the lights near the ceiling. "If he gets hot, maybe he'll sing to you."

There were three symposia on the afternoon; I happened to go to one on mating signals. this was followed by another featured lecture by Ed Kravitz. Ed used to work with animals close to my heart, crustaceans, but in the last decade or so turned to work almost exclusively with one of “the evil four,” fruit flies, primarily because of the advantages of genetic tools. Afterwards, Ron Hoy got up and complemented it as one of the best examples of actual ethology cal work he’d seen using fruit flies. (Peer pressure, maybe?)

Now, as you may have gathered, there are a lot of plenary and special lectures at this meeting. I had some discussions about this over dinner. I am not sure it is all that good to have so few voices given the lectern. It must be nice for those who get it, I’m sure. But it certainly doesn’t help diversity when so much of the meeting is by established voices, many of whose have give featured lectures at this meeting before. Now that this meeting is every other year rather than every three years, this sameness may become a bigger issue than in the past.

I also had a short but very animated chat with Kathryn Knight, the news and views editor of The Journal of Experimental Biology and keeper of their Facebook page about scientific publishing. Key phrases: “collateral damage of push for open access,” the relative quality of PLOS One, American attitudes towards taxes, and how different kinds of biological researchers view their budget totals (especially regarding open access fees), and how much sense people other than scientists can make of the primary literature.

Would live to elaborate, but have to get up in not too many hours.

06 August 2012

Tenth International Congress for Neuroethology, days 0 and 1


Man, I am having no luck with travel these days.

I arrived at the airport about an hour early, as usual. I tried automatic check-in, but it wasn’t working, so I went into the line for the counter. I think I was about 5 or 6 in line.

I didn’t move for about 40 minutes. But after about 10 or so, a huge long line formed up behind me. I overheard someone say that the flight had been completely cancelled. Sure enough, a few minutes later, I got an automated call from the airline telling me that I was rebooked on a flight leaving at 3:00 pm. A four hour wait.

Fortunately, the McAllen airport has free wifi. And it’s amazing what’s tolerable when you have free wifi and something to take advantage of it. A few games, some Netflix, and the time just whizzes by.

Even the replacement flight was late getting off the ground. And it was frustrating because the departure time kept sliding, a little bit at a time, so I was never sure if I could sit down for an actual meal. I could have done, but kept getting less than satisfactory bites. But we finally got on the way to Dallas about 7:45 pm. I reckoned that I’d spent as much time in delays as I had been scheduled to spend travelling, total. In the end, we touched down at about 11:25 pm. Ugh.

For stupid lack of preparation reasons, I did not make it to campus that night. But on the plus side, I was able to follow the landing of the Curiosity rover on Mars more or less in real-time on Twitter at 1:30 am (no wifi at the time for anything more substantial). Amazing stuff.

On the plus side, I played a bloody awful lot of Cut The Rope Experiments. Which, now that I think about it, kind of feels appropriate for Neuroethology. Lots of three star levels... I am only four stars short of claiming them all.

Setbacks aside, I caught the first train of the Metro to the University of Maryland. I was surprised at how many people were on the 5:00 am train, but I suppose I shouldn't have been.

I got on to the University around 6:30 am or so, found some breakfast and free wifi at a nearby McDonalds, and saw the first signs of the conference at quarter after seven. I made my way to my room in student residence, had a super quick shower and shave (too fast - nicked myself) and walked into the ballroom just as the very first plenary talk of the conference was starting.

I could not have cut it any closer.

But with only one day into the meeting, a few interesting trends are already emerging. People are worried about how they are going to sell neuroethology to funding agencies.

In his opening talk, Art Popper discussed this at some length. He had the good fortune to find several issues related to his research that had clear policy implications. for example, he talked about noise generated by pile drivers and how that could affect fish stocks. Popper said he found it gratifying that policy makers really did listen to scientific recommendations.

Popper (and several others) mentioned the landing of the new Mars rover Curiosity as something that go people excited about science. He repeated the common refrain that scientists do not do a good job of communicating what they do to the general public. (Yet no social media workshop? Hm...)

This was followed by a set of talks that were mainly historical in nature, with some guessing about prospects for the future. The predominance of what Ron Hoy called the “core four” model organisms - mouse, worm, zebra fish, and Drosophila (which others started to call the evil four) was also traced back to funding agency's priorities. The NIH wanted to support research that emerged from the human genome project, And the emphasis on genetic models arose from that.

Hoy gave something of a rabble rousing speech, saying that the field is very much in transition. The core techniques are changing fast, with more genetics and less electrophysiology. It is rare to have jobs advertised for “neuroethologist.” Hoy speculated that the future of neuroethology for the next decade may lie more in small liberal arts universities than major research institutions.

In the final talk of the night, Jim Simmons also kept coming back to how he is looking for ways to pitch his research. He said, “We need to convince founding agencies that we, and our animals, have solved problems that they consider unsolvable.”

I tweeted a lot from the sessions. Search #icn12 on Twitter for more short notable quotes. But as for now, I have been up for about 38 hours and I think the long expected crash is almost here.

04 August 2012

Neuroethology bingo

Tomorrow, I am getting on a plane and heading to the Tenth International Congress of Neuroethology at the University of Maryland. I’ll be blogging throughout the week, and tweeting with the hashtag #icn12. I’m particular excited to be co-organizing a symposium on nociception that will be held Friday!

For the amusement of fellow conference attendees (click to enlarge)...


Fashioned after similar bits of tomfoolery at Nothing in biology makes sense! and Dynamic Ecology.

30 July 2012

“Student friendly”

I often hear colleagues extolling the virtues of taking undergraduates and beginning grad students to “student friendly” conferences.

What does that even mean?

I have never seen any conference that was unfriendly to students, except for the price of admission and the cost of travelling to the conference. At every conference I have seen or been to, students have been treated well. The younger the student, the more likely they are to be encouraged and congratulated for showing up and presenting (if they are). Has anyone been to a conference where students are treated badly?

The first conference I went to was a national meeting; Animal Behavior Society meeting in Montana, as I remember. It was a confidence booster, because as I listened to presentations, I heard other people in the room asking questions that I was thinking in my head. My questions were not out of the ballpark. Some conversations I had over meals were also good for similar reasons. These helped me realize that I was on the same playing field as the other attendees.

As far as I can tell, “student friendly” seems to be code for “small, local, and cheap.” And that usually means it has a limited scope in terms of the presenters, the research shown, and the opportunities for students to network.

Students should be taken to “the big show,” early and often. They need to see the full range of current science. They need to field questions from all sides, from people with different intellectual backgrounds and different kinds of institutions.

Additional, 4 August 2012: The Singular Scientist has a post looking at student experiences at a conference.

23 July 2012

Travel: TARFU

Last Friday was the last day of the Gulf Coast Summer Institute, an teaching workshop. It was a very enjoyable week that ended at mid-day. I was looking forward to going home after a week away.

But getting home proved to be a trial. Almost everything that could go wrong, did go wrong.

There were only three people from the workshop that were flying out, and two were from my institution. We went to the airport early so that the third flying participant could catch her flight. When we checked in, my colleague Erin noted that our flight, which was not due for several hours yet, was already showing as “delayed.”

Not good. We had a very short layover scheduled in Houston, and a delay meant we would almost certainly miss our flight back to South Texas. Erin sensibly suggested we try to get on an earlier flight to Houston.But that flight was sold out, so we got issued stand-by tickets. Unluckily for us, no seats opened up at the last minute.

The second flight – the one were were supposed to be on in the first place – did not show up on time. At this point, we’re getting nervous because there is only one more flight out of Baton Rouge this evening, scheduled to come in about an hour later. The airline service guy announces that they are going to combined all the passengers from our “missing” flight and the later one. They have enough room, so that’s fine – except we will almost certainly miss our connecting flight.

Even this third combined flight comes in and leaves a little late. After the short flight to Houston, we land... and the pilot informs us that there is no gate open for us. We are stuck on the runway waiting for a gate to open up for another half hour or so. While we had long given up on making our connecting flight, others on the plane could have made it if they had gone into the gate right after landing. (Afterwards, we saw the pilot tearing a strip out of the ground crew for not having a gate available.)

I check the departure lists for any flights to the valley. McAllen? No. Harlingen? No. Brownsville? No. The last flights from Houston were all gone.

Erin refused to spend the night in the airport, so we set off to the shuttle to the rental car building. Erin and I have a discussion about which agency to try, and I suggest one that I know has a centre in Edinburg.

We go to them, and they’re out of cars.

I say again: a car rental place. Out of cars.

We try car rental agency number 2. There is only one person behind the desk, and he seems intent on giving his current customers the absolute best service ever. In other words, he is taking forever. I think he was trying to see the guy some sort of lifetime membership, or something. A single car should not have taken that long. After a few minutes of standing around and seeing zero indication that he’s going to wind it up and get to answering our question, time to try again.

Erin goes to try rental agency #3. They will only do round-trip rentals. We’d have to bring the car back to Houston airport, and that’s not happening. (Agent behind the desk at #2 is still engaged with his first customers.) Denied again.

Agency #4 finally hits all the boxes: they have cars, and they’re willing to rent to us. And this is almost perfect except... Erin only has a debit card with her, not a credit card. And this means that she is not allowed to drive the car. So I have to drive this late night, early morning trek from Houston to the Rio Grande Valley alone, with no switching between us.

Fortunately, once we finally get into our rental (a nice little Kia), and only get slightly turned around trying to leave Houston, the trip back is not so bad. Apart from being the middle of the night after a week of less than great sleep. We finally roll home after at about 4:30 in the morning.

And I knew, just knew, my stupid circadian rhythm would be going, “Hey, it’s morning! Time to wake up!” I only got about three hours sleep before waking up again...

At least I got a story to tell out of it.