19 December 2002

Well, dang!


In the bad news column, just checked my emailbox and found this:

"Dear Dr. Faulkes:

"I regret to inform you that the National Science Foundation is unable to support your proposal..."

For those of you scoring at home, this is the answer to a proposal I submitted back in early July.

Two grant proposal rejections in one week. I haven't yet checked what the reviewers have to say; don't think I'm up to it tonight. There might be a chance to rewrite this and resubmit it.

In the meantime, I shall simply make the occasional Grinch-noise from my small office overlooking the town of Grants-ville.

13 December 2002

Bugger.


In the bad news column: My "letter of intent" for the Whitehall Foundation won't be continuing into a full grant proposal. The rejection letter said they got 81 letters that might lead into grants, of which they gave the nod to 17. They eliminated 79% of the applications in just that first stage of screening. Those remaining 17 now have to write full grant proposals.

Back to the old drawing board, as the saying goes.

;;;;;

In the good news column: All my marks for this semester got handed in yesterday.

12 December 2002

Symposium poised for publication


And in the good new column: The Animal Behavior Society symposium I've been organizing looks like it's found a home where the talks from it can be published as proper scientific papers. If all goes well, the symposium will be published in the Journal of Comparative Physiology A.

It's all very encouraging. I feel like I'm watching a cocoon, and starting to think that a bird might emerge instead of a butterfly.

;;;;;

In the bad news column, I'm trying to finish the marking for my students, but the class website won't let me log in, and I need some of that information to finish! Grr. This is what I get for embracing computers. They turn on me in my hour of need.

09 December 2002

Manual labor


For this I spent six years in grad school?

I was planning on getting out of the office early, when one of my colleagues walked into my office and asked if I wanted to help clear out lab space. I said, "No." It was the honest answer -- I really didn't want to move stuff. But I'm a pushover, and did it anyway.

There are several unfinished lab spaces in our building, and they're about to start construction for our two newest faculty members, Mike Persans and Chris Little. Unfortunately, as with so many empty spaces, they became magnets for unwanted junk. In the case of Chris's lab space, this was a bunch of stuffed animals and a number of huge, heavy glass cabinets on very skinny metal legs.

Whole lots of no fun to move. It took six people to handle one cabinet.

The cabinets were so tall, we couldn't get them out of the room without tipping them over. We broke one of the legs when we tipped a cabinet over, because the leg was just too flimsy to take any pressure. And we had a couple of scary moments where the cabinets started to tilt, but we caught them before they went over.

We got halfway through, and should finish clearing the spaces out tomorrow.

04 December 2002

Classes done for the year


I just gave my last lecture for the year! Huzzah!

The work for this semester's teaching is not done, though. My students still have quizzes to complete, and I have to calculate and hand in their final marks. But still, having the lectures complete is a nice feeling.

Meanwhile...

I should be hearing back from the Whitehall foundation around the end of next week if they like my "letter of intent" enough for me to submit a full proposal.

My revised proposal for an Animal Behavior Society symposium has been given the thumbs up. Word about it is now getting around under the name, "The neuroethology of decision-making." The title isn't exactly what I had in mind, but it's certainly snappy. I even had a colleague from Germany contact me, asking if there might be a way he could participate as a speaker. (We'll have to wait and see.)

The next major thing I intend to do for that symposium is to see if I can rustle up a little more cash, and maybe find a place to publish the papers.

Seeing that this symposium thing seems to be working out all right, I submitted a proposal for another symposium today. This one, if it goes, would be for the annual Karger Workshop held by the J.B. Johnston Club. But with ABS symposium next year in 2003, I'm suggesting this workshop for 2004.

02 December 2002

Review of The Structure of Evolutionary Theory

I threatened I would do this. But seeing Gould's book on the general science section on the shelves of Barnes & Noble decided it for me. I feel I must warn the general public: If you are not a professional biologist, you are absolutely barking mad if you are thinking about reading this book.

It's not because the book is big (so obviously so that it's impossible not to mention it), or because it's boring (it isn't). It's just because this book is not aimed general readers, not even well-informed ones. Gould doesn't define a lot of the technical terms he uses. (Know what anagenesis is? How about formalism or internalism?) He even makes the occasional comment like, "And we know how the data for that turned out." And sure, I know what he's referring to, because I'm a professional biologist with an interest in evolution -- but it's the sort of comment that seems designed to frustrate a casual reader.

I suspect many copies sold in general bookstores will be left on shelves, unread, as a subtle ad to convince friends and visitors of how smart the buyer is. (Many people explain how Stephen Hawking's A Brief History of Time spent so long on the bestseller lists this way.)

That said, because I think this book is interesting and important -- people will be discussing it for years, literally -- it's good for those of us who've read it to try to summarize and comment on it.

So here we go.

In Chapter 1, Gould has two contentions. First, there are three basic things Darwin proposed that make natural selection an important and powerful theory. Second, all three of those basic ideas have been substantially expanded by recent research. Darwin wasn't wrong about natural selection, but it is not the whole story. I'll paraphrase Darwin's idea in bold and the expansion that Gould suggests after in italics.

1. Natural selection works on individuals.

Selection occurs at many levels. In particular, punctuated equilibrium implies that selection of species occurs and is important for macroevolutionary patterns.

2. Selection for small, adaptive features in organisms is the major source of evolutionary change.

There are limits to how much organisms can change over time.

3. There was nothing special about the past. We can use what happens around us today to extrapolate what happened in distant yesterdays.

Sometimes, a really big rock falls out of the sky.

Gould spends the rest of the book's first half exploring historical ideas about evolution. Gould is clearly in his element here, and the scholarship is impressive. In fact, it comes out that Gould owned many key books. Several pictures were taken from his own collection of antique books, some of which had never been published before.

Chapter 2 discusses (or, to borrow one of Gould's stylistic tics, "presents an exegis of") Darwin's Origin of Species. Considering that Origin of Species is one of the most famous books in science, is it worth it? "Darwin said..." gets said a lot in biology. Gould's agrees that Darwin said many things, but makes it his mission to disentangle comments made in passing versus the major themes that Darwin revisited over and over.

Subsequent chapters discuss the historical counterclaims to Darwin's three major ideas. Gould is not aiming to revive these older criticisms of Darwinism, but he clearly does want to show that the expansions to evolutionary theory he's discussing have a long and serious intellectual history.

Chapter 3 discusses point 1, above (individual vs. hierarchical selection).

Chapters 4 and 5 focus on point 2 (which Gould variously typifies as "functionalism vs. formalism," or "externalism vs. internalism." He never clears up the difference between these terms, if he intends one). I found these to be quite fascinating. Gould points out that there was a long tradition of treating the evolution of species the same way as the development of individual organisms. Some workers went so far as to argue that species had predictable stages of birth, development and growth, and inevitable weakening and death.

Chapter 6 looks at geology, and how strongly the idea of uniformity of events impressed itself on Darwin (point 3 above).

Chapter 7 covers the so-called "Modern Synthesis" of the mid-20th century. Gould emphasizes how utterly confident researchers at the time were in the all-powerfulness of natural selection, and in the completeness of natural selection as a theory.

Chapter 8 leads the second half of the book, and it's a lengthiest slice, laden with digressions. The Table of Contents entry for this chapter alone spans almost three pages! You might call this the "punctuated equilibrium" chapter: punctuated equilibrium clear has pride of place in Gould's efforts to develop a theory for species selection. Gould freely and frequently admits his bias: after all, he developed the idea of punctuated equilibrium with Niles Eldredge.

Gould spends many pages examining studies designed to provide evidence (pro or con) for punctuated equilibrium, and concludes that punctuated equilibrium occurs at relatively high frequencies. This is a major starting point from which Gould develops a hierarchical theory where natural selection can occur at any biological level, from the small to the large.

This chapter is simultaneously fascinating and frustrating, because it is so personal for Gould. Gould does not mince words in describing how biologists responded to punctuated equilibrium. He claims that some of the controversy around the idea was due to professional jealousy on the part of some colleagues. On the other hand, I could have done without the long sections where Gould examines how others have used or misused the idea of punctuated equilibrium outside biology. While it's hard to criticize digressions in such a huge volume, laden with footnotes that span multiple pages, these sections have little to do with the book's self-declared purpose.

Where are we again? Ah, Chapters 10 and 11. I group these two chapters together because they are both concerned with the ideas that there are constraints upon natural selection, and that not every biological feature is an evolutionary adaptation.

I also think of Chapter 10 and 11 and "the spandrels chapters." What's a spandrel? Biologists probably know (or know about) a paper co-written by Gould (with Richard Lewontin), partially titled "The spandrels of San Marco." For you non-biologists – or non-architects – a spandrel is a bit of architectural space. Specifically, when you put two arches next to each other, there's going to be a space between them. You can use that roughly triangular space for decoration, although the space wasn't made for decoration. Gould and Lewontin argue that many features in living organisms are spandrels: they weren't custom made for anything (just as architectural spandrels weren't made for decoration), they were just conveniently... well... there for other reasons. The idea of that biological spandrels are commonplace expands traditional Darwinism, argues Gould, because in most conventional Darwinian explanation, pretty much everything is argued to be "custom made;" that it, every feature has some sort of adaptive function.

These two chapters also has Gould discussing recent developments in genetics, which showed that regulatory genes that control some aspects of growth have stayed more or less the same in a wide variety of animals for a very, very long time. This was a startling finding, because Darwinians argued that given time, almost everything would have been fine-tuned and replaced through natural selection. This field, as Gould himself admits, is moving so fast that this chapter is probably going to be outdated before any of the others.

Almost done...

Chapter 12 is relatively short. It asks, "Doe the processes driving evolution stay the same throughout evolutionary time?" Darwin counted on that fact. Gould argues that the answer is "No," citing as his major example that we now have a prime candidate for the extinction of the dinosaurs: a meteor hit the earth and upset the applecart. A meteor strike is sufficiently unusual that it can't be counted as a routine event, but it definitely had an important impact on the face of life on this planet. Gould notes, though, that although the planet has had several mass extinctions, it doesn't seem that meteor impacts explain any extinction except the one at the end of the Cretaceous. So, while Gould applauds the fruitful science that lead to the discovery of the meteor impact, he does seem wistful that it hasn't led to a more wide-ranging theory.

The final epilog (which Gould calls, "honest to God, a true end to this interminable book") is quite affecting. Gould pays tribute to his hero, Charles Darwin, in a moving way. Gould writes that even without Darwin, biologists would have a theory of evolution – eventually. But, "we would have experienced the same biological revolution without the stunning clarity… of a complex central logic so brilliantly formulated(.) In this alternate world, we would probably be honoring a different and far less compelling founder by occasional visits to a statue in a musty pantheon, and not by constant dialogue with a man whose ideas live, breath, challenge, taunt, and inspire us every day of our lives, more than a century after his bones came to rest on a cathedral floor..."

We were pretty lucky to have Darwin, Gould says.

And we were pretty lucky to have Gould, too. While there are lots of criticisms to be launched The Structure of Evolutionary Theory (particularly that some editor should have reigned in Gould's excesses), the ideas presented within will be rich grounds for discussion for years to come.

27 November 2002

Role reversal!


Today's top in Edinburg, Texas: 9 degrees C. (Felt like 5 degrees C, according to the meteorologists.)

Today's top in Calgary, Alberta: About 14 degrees C.

26 November 2002

What's on the plate?

This comic pretty much says it all.

Otherwise, how are things? I'm in the last two weeks of classes. Luckily, by having my classes taught partly online, and using weekly quizzes instead of huge tests, there's no massive rush to finish things at the end of the semester.

I'm now getting more worried about next semester's classes, when I'm supposed to teach my new Neurobiology class and redo a graduate student class in Advanced Cell Biology. Two new classes in one semester. Could be... interesting... in the Chinese sense of the word.

Just sent off a revised proposal for the Animal Behavior Society symposium I've been toiling away on. It's one of a whole slew of little things I've been meaning to get to that I think I'll get done this week. This week may hold a holiday for all these Americans around me, but for me, it's just a chance to work in my office without interruptions...

22 November 2002

Policing


Walked into my second lecture this morning, and was puzzled to see men in uniform with microphones attached to their shoulders. Turns out they were police, and they had a warrant for the arrest of one of my students. Said student was not in the class, which I was rather happy about, as it avoided any potentially awkward situations.

Makes the computer in the lecture theatre not working seems kind of a small in comparison.

20 November 2002

Ad busting


A few entries back, I mentioned that I had an ad appear in the middle of one of my classes. The ad was for a university diploma, as it happened.

To see the exact irksome ad I was talking about, and -- more importantly -- how to prevent these stupid things, check this article.

16 November 2002

Consulting


On Thursday and Friday, spent some time with a consultant. Some branch of the University has hired him to help people turn in more competetive grant applications. I was a little disappointed by one of his last comments, which was basically, "Change your research interests to something funding agencies are interested in, so you can get some money."

I hope it won't come to that. Ever.

I also had some very interesting words with our VP Research, Wendy Lawrence-Fowler, when I went by her office for something totally unrelated. Seems the University is investigating research partnerships with universities in Vietnam. Lot of interesting animals in Vietnam, I'll bet.

14 November 2002

Equipment arrives!


A delivery man finally rolled into my office with two packages from the U.K. Specifically, two packages from CED: my analogue/digitial board, an amplifier, and a lot of bits of cord and documentation and styrofoam. It all seems to be in good working order. Or at least, the little lights in the front went on when I plugged them in, which is a step in the right direction.

It all puts me a step closer to getting my first nerve cell recordings. I'm pretty excited about it.

It almost makes up for my voice being scratchy, my throat feeling congested, and this stupid ache in my right hip. I've felt better...

13 November 2002

Society for Neuroscience 2002, Part 5


Tuesday, 5 November: SFN 3
We have a late afternoon flight, which means I get to spend half a day at this meeting. I bring Sarah along just to have a peek at the vast huge expanse of science. She's a good sport and pretends to be mildly interested before running off and doing other things.

While walking around with Sarah, I come across my favourite quote of the meeting:

"If the brain were (sic) so simple we could understand it, we would be so simple we couldn't." - Lyell Watson.

(I saw this written under a quickly sketched human brain on a white board in the History and Teaching posters).

It's good to see that even in a room full of people with many, many advanced degrees, the fate of a stray piece of paper isn't much different than elementary school...

paper plane

But even though there are still two days left in this meeting, some people are already worn out. But if you've spent too long in front of posters talking science, it's good to know you can get someone to give you a quick rubdown.

massage stand

Though I did overhear some other members attending comment, "It'd be weird to have a stranger massage your feet..."

We get back to the hotel, spend a lot of time waiting for the shuttle to the airport. We have enough time to look through all the airport stores, then spend a fair amount of time waiting around in the airport lobby. We get back late, and the process of catching up begins...

Hm. Now that I'm all caught up with my web journal (only took me a week), I may be caught up on everything. Or at least as caught up as I ever get...

Tracking equipment

No, I'm not talking about equipment for tracking, I'm talking about tracking equipment that's coming to me. One of the last major pieces of equipment I need for my lab -- which I ordered back in June or July -- is finally on its way here. According to FedEx, my analogue/digital board and amplifier from Cambridge Electronic Devices is in Memphis.

What is this equipment for? It takes an electrical recording (from a nerve, neuron, or muscle) and converts it to a signal that my desktop computer can understand, store, and manipulate. Physiologists used to (and probably some still do!) use reel-to-reel tape recorders to store their recordings. I did much of my doctoral work that way, but I'm thoroughly pleased to be past that point.

Of course, how long it'll be before I physically touch this equipment. I had two phone calls about its entry into the country yesterday, so who knows how long U.S Customs will hang on to it.

12 November 2002

Caption contest!


"And a little of this applied once a day will remove wrinkles virtually overnight!"

Maybe that what's the goof in the center is thinking.

I was a little surprised when a student showed me the new graduate catalogue, since I wasn't expecting to be in it. I did know my picture was being taken in front of our Coastal Studies Lab. They had a professional photographer taking publicity pictures with a bunch of volunteer students. The photographer asked if I had any equipment that we could pose the students with, and I said, "I have a shovel." Not quite what he had in mind, I think.

So we went out to the beach and I dug for my sand crabs. I'm pretty sure I hadn't found any when this picture was taken. So I just had to pretend that the sand I was pulling up was mighty interesting...

I eventually did find some crabs, but they didn't use that picture.



11 November 2002

Society for Neuroscience 2002, Part 4


Monday, 4 November: SFN 2

One of the fun things about a meeting like this is stumbling across little creative touches in posters.

poster logo

I spend the day looking at people's posters and talking to folks. Lots of interesting conversations. One is so interesting, I miss a scheduled meeting with Paul Stein, a possible speakers for "my" Animal Behavior Society symposium. Fortunately, I run into him that evening at a social and do a few mea culpas for missing him.

social sign

Socials are another fun thing about the Society for Neuroscience meeting, and is another way to make the meeting feel smaller and more intimate.

Notice the motto in the upper right corner of the sign? "It's about the science." I'm a little relieved by this. Last year's motto bugged me: it was, "Unraveling the mysteries, delivering the cures." Maybe I wasn't the only person a little put off by a slogan that seemed to ignore (or maybe even alienate) people not doing medical research.

;;;;;

After the social, Sarah and I went out to dinner at a place called Jungle Jim's. Good food, excellent service. Sarah tries a burger called "Peanut Butter Bet." Yes, it's a burger with peanut butter, and if you don't like it, they scratch it off the bill and don't charge you for it. Waitress Aurora says the peanut butter reminds her of a Thai peanut sauce. Aurora rocked; we have fun being her customers. She's intrigued by my job description, and practices saying "invertebrate neuroethology." When she reads my credit card ID, we get to commune about our weird names.

Interruptions


Spam. Every time you think it couldn't get more annoying, somebody proves you wrong.

I was in the middle of a General Biology lecture on genetics. I use PowerPoint as part of my lectures, so the computer is on and projecting on a screen.

Suddenly, a window appears spontaneously, advertising university degrees. You know the pitch. For a low price, you can get a degree from a "prestigious non-accredited institution." (Now there's a contradiction in terms!) "No one turned down!" "Degrees based on life experience..."

Yeah, like this is a message I want thrown up in the middle of a lecture to a bunch of first-year students. You might as well make up a degree in your own graphics program, print it and tape it to the wall -- it has about the same value.

I wasn't surfing the net (though the computer was connected) or using any program that is advertising supported. I reckoned some sort of adware is on the computer. These annoying little programs are often bundled and installed -- without warning -- as part of a larger program you want.

After the lecture, I downloaded Ad-Aware, software designed to get rid of ad software. Sure enough, it found an ad program installed on the computer. I took great pleasure in getting rid of it. I hope that solves the problem.

;;;;;

Society for Neuroscience reports coming back soon.

10 November 2002

Society for Neuroscience 2002, Part 3


Sunday, 3 November: SFN 1

The main event gets cracking on Sunday in the Orlando Convention Center, where the privilege of having a medium bottle of pop will only set you back... $2.50?!

vending machine

The same sized bottles are 80 cents outside my office. The sad thing is, there are obviously people who pay that much, or those wouldn't still be there.

The thing that invariably impresses me about the Society for Neuroscience meeting is its sheer size. Non-biologists are always stunned when I tell them how many people come to this. They keep a running tally near one of the entranceways.

Tally board

And remember, this is only a single branch of biology... (And students still don't think you can get a job in biology besides teaching and being a physician.)

I'm always forced to compare the main poster session room to an aircraft hangar, because I don't really know of any other building that has the same sort of proportions as these massive convention centers that the SFN meetings are held in.

main room

There are scientific posters and vendors in this room all the way to the back. And the posters change twice a day. And there are presentations in tens of rooms outside of this one.

And yet, paradoxially, despite this meeting being so big (or perhaps because of it), you run into people you know very often. Because you simply can't even begin to hope to see even a fraction of the work on display, people are very focused about what papers they want to see. You begin to learn who's in your field of research because you keep seeing in front of the same posters you're interested in.

Note to new students in neuroscience: This is prime networking territory! Ask questions of the poster presenters, and strike up as many conversations around these posters as you can. These are the people who will be looking at your job applications and reviewing your grant proposals.

Society for Neuroscience 2002 Report, Part 2


Saturday, 2 November: Hookey and ISN Executive

The main item on my agenda, the ISN Executive Committee meeting, doesn't start until 2 pm, so Sarah and I go to Universal Studios for a while.


We have great fun. Sarah kicks butt in the Men in Black: Alien Attack ride. You get to shoot at rogue aliens in that ride and earn a score. Sarah was easily first in our car (160,000 points!), more than double my score (and I was in second place of four; over 60,000). If you ever take that ride, my tip is: pay attention to the dialogue!

I have to leave midway through the day, but Sarah stays and has a blast.

I make my way back to the ISN meeting, in my role as Chair of the Web Committee. This is the first time I've been in any meeting like this, so I find it all quite interesting. I get a lot of good suggestions about the Society webpage, some of which I've already started to put into motion.

Midway through the meeting, we go out to a very nice steak and seafood restaurant. It's so good and there's so much that I don't order dessert (which is pretty unusual for me!).

After that, my contribution to the meeting is done, so I go back to the social of the J.B. Johnston Club and chat to a few more researchers about things, particularly my planned ABS symposium.

While I'm at the J.B. Johnston Club social, I get to see Mary Sue Northcutt (a founding member of the club and super lady) take a jump into the pool -- completely clothed -- to raise money for student researchers.

09 November 2002

Society for Neuroscience 2002 Report, Part 1


31 October: Travel.

Air travel is fast and efficient... once you're in the air, that is. We spent a lot of time hanging around in airports, most particularly waiting for a shuttle in Orlando to take us to our hotel. Still, Hallowe'en is always fun, and we saw a few staff in the Houston and Orlando airports in a little makeup.

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1 November: Karger Workshop

The Karger Workshop is an annual symposium held by the J.B. Johnston Cub, and sponsored by the Karger publishing company. This year workshop was titled something like, "The Comparative Evolution of Cognition." I thought the title was a bit of a misnomer, because most of the meeting focused on only one topic: spatial memory. It was a much narrower symposium than the title indicated.

I have lunch with Phil Stoddard, the junior Program Committee for the Animal Behaviour Society, to discuss the symposium I'm hoping to hold next year. Phil is a thin, intense invididual, and I often think he's more gung ho to hold this symposium than I am. He talks about wanting people to leave the symposium thinking, "That's how I want to be studying behaviour!" While I think convincing behaviourists to go back to their labs and pick up microelectrodes is a tall order, I do appreciate Phil's enthusiasm and support.

Lunch with Phil is a good push to one of my major goals for this meeting: to find speakers and topics for my symposium.

To be continued...