Wednesday, May 16, 2012

Name that roar

My current SciFund video is inspired by old monster movies. I invite you to listen for the roar of the “monster,” Lepidopa:



In the preview, where the animals aren’t seen for long, I used the original Godzilla roar. But it didn’t fit with the images I filmed for the final video. Can you recognize what classic monster lends its voice to my Lepidopa in the video? Test your knowledge and vote below! And if you have not yet...

You should go to RocketHub and fuel my project!


A. Anguirus


B. Baragon


C. Rodan


D. Megalon


Answer is below the fold.

Comments for first half of May, 2012

Doc Becca gets a mailbag question about how you establish a scientific identity.

Culture of Science looks at crowdfunding, something near and dear to my heart this month.

Cath Ennis looks at the perils of open science and the risks of getting scooped.

Prof-Like Substance takes issue with reports of federal agencies’ overall funding rates.

A post of mine makes a cameo on The Sceptical Chymist.

An interesting graph on gay rights Flowing Data.

Ed Yong always writes well, but this piece about “How many cancers does something cause?” shines because it uses the expertise he gained from he pre-science journalist days.

Mendeley Blog looks at the “communicating science” panel from Experimental Biology 2012.

DrugMonkey wants to know how long your cover letters are.

I make a cameo on Oikos blog who looks at science role models who aren’t scientists.

I make another cameo in Figure 3 of this paper! Shema et al. 2012. Research blogs and the discussion of scholarly information. PLoS ONE 7(5): e35869. DOI: 10.1371/journal.pone.0035869. This makes Scicurious very meta, and I go even more so.

How many papers do you need to get tenure? Odyssey at Pondering Blather is on the case.

Tuesday, May 15, 2012

Tuesday Crustie: Calico

I know, I know, we’ve have had American clawed lobsters on this feature before. We’ve even had unusual colour variants before. But I think you’ll agree that this one is still worth it:


Homarus americanus, a rare calico morph.

Spotted here.

Monday, May 14, 2012

The Zen of Presentations, Part 54: Worse than reading bullet points

Everyone hates it when presenters read bullet points. It is one of the most common complaints about what PowerPoint has done to presentations. We can all read faster than any presenter can speak. If there is no more information than once the presenter has written on the slide, it's excruciating to wait for them when we've already know what he is going to say.

But there is something that just might be worse than reading bullet points out loud.

Reading the title of each slide out loud.

Slide titles are often just single isolated words, or short descriptive phrases at best. Consequently, reading titles breaks the flow of your speech, and sounds completely unnatural.

“Morning, Ralph. How was your weekend?”

“Introduction. Pretty good. Got out, did some shopping.”

“What did you buy?”

“Product description. Got a deal on a new flat screen TV.”

For all their problems, bullet points usually at least resemble normal sentences. Bullet points read out might be simple and dull, but at least they’re somewhat grammatical.

Wednesday, May 09, 2012

Fighty crab

I’m not above creating a meme to support my #SciFund project!

One of the surprising things about our local sand crabs is that while they are small, they are feisty little guys. They do have claws,and they always seem to find that one little fold of skin they can dig them into.

When I wanted to make a video about the “monstrously” large Florida sand crabs, this picture of an aggro sand crab naturally fit in.


But the possibilities for humour were too good to leave alone.


Generate new captions, and see existing ones, for Fighty Crab here! Or try here!

If you like Fighty Crab, you should also go to my #SciFund project!

External links

What crabs are the fightiest?

Tuesday, May 08, 2012

Tuesday Crustie: Da Ba De

Yo listen up here’s a story
About a little crab that lives in a blue world
And all day and all night and everything he sees
Is just blue like him inside and outside...



A newly described species, Discoplax celeste, from the tiny Christmas Island in the southern Indian Ocean.


Reference

Ng PKL, Davie PJF. 2012. The blue crab of Christmas Island, Discoplax celeste, new species (Crustacea: Decapoda: Brachyura: Gecarcinidae). Raffles Bulletin of Zoology 60(1): 89–100. http://rmbr.nus.edu.sg/rbz/biblio/60/60rbz089-100.pdf

Monday, May 07, 2012

Crowdfunding, open access, and innovation: here we go again

Crowdfunding science is getting a respectable amount of attention right now, but, as I mentioned last week, there is skepticism. As I was looking at some of the comments about crowdfunding, I thought, “I recognize those arguments.”

Arguments against scientific innovation have something in common with arguments against scientific evidence: the same objections and arguments are trotted out time and again with every new issue. Whether it’s tobacco in the late 20th century or human caused global warming in the 21st, you hear, “The science isn’t settled.” Whether it’s evolution or vaccines, deniers will say, “Let’s just let people decide for themselves.”

The arguments that you are going to hear against crowdfunding are, and will be, the same arguments that you have heard, and continue to hear, against open access publication.

You’ll hear a lot of variations of the “quality” argument:

[Open access publishing / crowdfunded research] is bad because it is not selective enough. There is not enough peer review*. It opens up the floodgates for crappy research.

The “not selective enough” argument was deployed against PLoS ONE, which was arguably a big success in promoting the open access model. PLoS ONE drew a lot of flak, with people saying that because it didn’t screen for importance, it would be a dumping ground. This is still lobbed at it, despite a good impact factor.

It is true that in the first round of SciFund, there wasn’t peer review. In the current round, we did do a “sanity check” on the proposals. This was good, because there was a proposal that failed it. Spectacularly.

That said, there isn’t a counter punch to anyone who brings up the quality argument now. It’s going to take a couple of years before crowdfunded research yields theses, dissertations, and that gold standard, publications in peer-reviewed academic journals.

SciFund is not the PLoS ONE (established 2006) of crowdfunding. It’s not even the PLoS Biology (established 2003) of crowdfunding. It’s the Psycoloquy (established 1990) of crowdfunding.

It could take ten years or more before someone creates a big model for crowdfunding in the way that PLoS ONE did for open access. Just as there are people who still snipe at PLoS ONE, there will still be people who will snipe at crowdfunding.

I hope to have draw some more parallels between open access and crowdfunding in the days to come.

* There are people who still equate “open access” with “not peer reviewed.”

Friday, May 04, 2012

Abandoment issues

Today, I’m pleased to have this guest post by Dr. Al Dove, one of the regulars of Deep Sea News. This started as an excellent question on Twitter, and I said he should blog about it. It didn’t fit on Deep Sea News, so I offered this space. And I’m so pleased he did!

By the way, Al is still looking for his whale shark tags (shown at right), which are somewhere in the South Texas area! - Zen




Time shall unfold what plighted cunning hides:
Who cover faults, at last shame them derides.

Shakespeare – King Lear

This is a post about shame. Specifically it’s about a special type of shame that I suspect many (most?) scientists feel and few discuss. It’s a shame that I have struggled with for my entire career, including grad school. I dared to share a glimpse of it recently in that most public of forums, Twitter, and learned that perhaps I was not alone. Emboldened by social media connections to folks I know both well and not at all, I am taking the next step of exploring my shame publicly, in the hope that we can learn more about this phenomenon.

There exists on my hard drive a folder into which I loathe copying files, but only slightly less than I would loathe deleting them all together. It is a folder called “Aborted Manuscripts” and it is this folder which is the source of my shame. It is a graveyard of stupid ideas and of great ones poorly executed, of unfinished cogitations, of journal rejections, of unresponsive colleagues and of frustrating students. It’s a roadmap documenting 15 years of science (read: “me”) not doing what science (read: “me”) is supposed to do – get published.

I currently have nine folders in my “Aborted Manuscripts” folder, each representing a scientific paper that wandered off, somewhere on the path between brain and CV. They range from a two page stream of consciousness spewed into MS Word after a 20 hr drive from Mobile to NY to escape Hurricane Dennis, to a manuscript that I dearly love but which has been rejected several times for reasons that are still not clear to me even now, seven years later. As I look through them, I am always overcome with a curious mix of emotions: I am impressed with how much work I and others have done, yet disgusted that I/we couldn’t honour that work by getting it across the finishing line. There are tasty kernels of hope - “Maybe there’s life in the old gal yet…” – and bitter pills of realism – “I don’t even know where the specimens are anymore…”, pangs of embarrassment for promises I didn’t fulfill for respected colleagues, and stabs of anger/frustration at promises to me not fulfilled by others, and always a seething undercurrent of shame about not having closed. The. Deal.

When the emotions subside, here’s what I see in that folder, as objectively as I can class them:

  1. Jumping the gun. Sometimes it just wasn't ready to publish; my enthusiasm outstripped either my ability, or the data, or both. More studies were needed and if they were done, which they often weren't, the previous work was contradicted or became irrelevant somehow. These are the ones where I shake my head and smile at my own naïveté. What was I thinking?
  2. My fault. It was a good idea and good work, but some part of the work or the publishing thereof, was mishandled and I have to accept the blame. Usually, but not always, it was an issue of time management; I either couldn't make the time to finish it, or for whatever reason it dragged on so long that it was no longer interesting or I lost motivation. I include in this category the last of my dissertation papers, which was perfectly good but got lost in the haze of moving on to employed life on another continent. I have a couple of others where my failings more directly affect other folks, and these are the true source of 90% of my shame.
  3. Someone else’s fault. I do have a couple where I can squarely blame someone else for not finishing some critical aspect of the work. I bet you they’ve all forgotten about it by now, but I haven’t. Maybe I should.
  4. Rejection. I only have one that is a journal rejection. This one causes me more confusion than anything, because I still don’t really understand why it was rejected. Four times. (Well, two were Science and Nature, so I guess it’s been rejected by “real” journals twice). Sigh.

Faced with the “Aborted Manuscript” folder, a few options spring to mind. I could delete them all, spring clean my hard drive and my conscience and just move on. Or, I could keep them as reminders of the imperfection of real science, and work on just not feeling so damn bad about them all the time. Or, I could try to resurrect one or more and get them across the finishing line. That last one’s trickier than it seems. You have to ask “Am I ready to get back into the mind set of that work?”, “Can I lay my hands on all the necessary data and analysis details?”, “Will my co-authors still want to participate?” and most importantly there is the opportunity cost: “Is this taking away from a more contemporary project that I ought to be working on”. In general, I worry: “By doing this, am I throwing good money after bad?”

I don’t have answers for these questions, nor have I resolved which option to pursue. Perhaps you can help me decide in the comments section below. More importantly though, I’d really like to hear about whether others have “Aborted Manuscripts” folders of their own and, if so, how do you feel about them and what have you done with them? I think this is perhaps an important part of scientific life that we're not talking about, or at least not talking about enough.



Postscript from Zen: I had a few papers that waited about five to six years to be published. So manuscript resurrection can happen! That’s the first and most important point.

I currently have one manuscript that hasn’t yet found a home. I have a couple of projects that never quite made it to the manuscript stage, at least not yet. 


I wrote a bit about how to decide when it’s time to publish a project over at Scientopia’s Guest Blog earlier this week.

There is some information in the research literature about this. This paper by Casey and Blackburn looks mainly at reasons for rejection, but deals with “orphaned” manuscripts a little as well.